SNP Profiles matching MAN 15 /60 [BRA]

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 Key

 1234567891011121314
_Input profile
TTCCCCGTCCGGACCGAATTAGGGAAAG
1._RUQ_86
TTCCCCGTCTGGACCGAGTTAGGGAAAG
2._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
3._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
4._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
5._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
6._GC-05-072-2-23
TTCCCCGTCCGGAACGAATTAGGGAAAG
7._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
8._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
9._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
10._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
11._MAN_15_/2_[BRA]
__CCGTCC_AACGAATT__AAAG
12._MAN_15_/2_[BRA]
__CCGTCT_ACCGAGTT__AAAG
13._MAN_15_/2_[BRA]
__CCGTCT_ACCGAGTT__AAAG
14._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
15._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
16._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
17._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
18._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
19._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
20._GC-08-050-1-61
TTCCCCGTCTGGAACGAGTTAGGGAAAG
21._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
22._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
23._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
24._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
25._GC-05-055-2-06
TTCCCCGTCTGGAACGAGTTAGGGAAAG
26._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
27._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
28._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
29._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
30._GC-05-148-4-01
TTCCCCGTCTGGAACGAGTTAGGGAAAG
 1516171819202122232425262728
_Input profile
ACCCGTCGACCTCCCCGGAGTTACGGCC
1._RUQ_86
ACCCGTCGACCTCCCCGGAGTTACGGCC
2._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
3._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
4._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
5._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
6._GC-05-072-2-23
ACCCGTCGACCTCCCCGGAGTTACGGCC
7._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
8._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
9._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
10._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
11._MAN_15_/2_[BRA]
ACCCGTCGAC_CC_GG___GG_
12._MAN_15_/2_[BRA]
ACCCGTGGAC_CC_GG___GG_
13._MAN_15_/2_[BRA]
ACCCGTGGAC_CC_GG___GG_
14._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
15._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
16._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
17._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
18._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
19._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
20._GC-08-050-1-61
ACCCGTGGACCTCCCTGGAGTTACGGCC
21._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
22._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
23._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
24._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
25._GC-05-055-2-06
ACCCGTGGACCTCCCTGGAGTTACGGCC
26._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
27._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
28._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
29._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGGCC
30._GC-05-148-4-01
ACCCGTGGACCTCCCTGGAGTTACGG_
 293031323334353637383940  
_Input profile
TTAACCCTGGAGTTCTCTCCCGAAX_XX_X
1._RUQ_86
TTAACCCTGGAGTTCTCTCCCGAAX_XX_X
2._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
3._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
4._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
5._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
6._GC-05-072-2-23
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
7._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
8._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
9._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
10._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
11._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
12._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
13._MAN_15_/2_[BRA]
CTAA_CT_____CCCGAAX_XX_X
14._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
15._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
16._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
17._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
18._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
19._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
20._GC-08-050-1-61
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
21._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
22._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
23._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
24._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
25._GC-05-055-2-06
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
26._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
27._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
28._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
29._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X
30._GC-05-148-4-01
CTAACCCTGGAGTTTTCTCCCGAAX_XX_X

Input profile: MAN_15_/60_[BRA] RUQ_87

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAN_15_/2_[BRA] RUQ_86

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._MAN_15_/2_[BRA] GC-05-072-2-23

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._MAN_15_/2_[BRA] GC-05-072-2-23

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

4._MAN_15_/2_[BRA] GC-05-072-2-23

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._MAN_15_/2_[BRA] GC-05-072-2-23

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._MAN_15_/2_[BRA] GC-05-072-2-23

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

7._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

8._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

9._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

10._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

11._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

13._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

14._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

16._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

17._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._IMC_119 GC-08-050-1-61

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._LP_1_/41_[POU] GC-05-055-2-06

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._LP_1_/41_[POU] GC-05-055-2-06

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._LP_1_/41_[POU] GC-05-055-2-06

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

24._LP_1_/41_[POU] GC-05-055-2-06

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._LP_1_/41_[POU] GC-05-055-2-06

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._LP_1_/41_[POU] GC-05-148-4-01

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

27._LP_1_/41_[POU] GC-05-148-4-01

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

28._LP_1_/41_[POU] GC-05-148-4-01

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._LP_1_/41_[POU] GC-05-148-4-01

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._LP_1_/41_[POU] GC-05-148-4-01

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1309 37TcSNP1439 38TcSNP1442 39TcSNP1458 40TcSNP1484